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agricolae (version 1.3-6)

Statistical Procedures for Agricultural Research

Description

Original idea was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, National Engineering University (UNI), Lima-Peru. Some experimental data for the examples come from the CIP and others research. Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.

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Version

Install

install.packages('agricolae')

Monthly Downloads

21,528

Version

1.3-6

License

GPL

Maintainer

Felipe Mendiburu

Last Published

June 30th, 2023

Functions in agricolae (1.3-6)

agricolae-package

Statistical Procedures for Agricultural Research

Data and analysis Mother and baby trials

Multiple comparisons. The van der Waerden (Normal Scores)

Ryan, Einot and Gabriel and Welsch multiple range test

Student-Newman-Keuls (SNK)

Data amendment Huanuco 2006

Multiple comparisons, "Least significant difference" and Adjust P-values

Calculating the absolute or relative value of the AUDPC

Analysis of the Partially Balanced Incomplete Block Design

Data Line by tester

Data of Ralstonia population in clay soil

The Area Under the Disease Progress Stairs

Augmented block design

consensus of clusters

Correlation analysis. Methods of Pearson, Spearman, Kendall and Lin

Plotting the multiple comparison of means

Correlation Coefficient

Completely Randomized Design

Plotting the standard error or standard deviance of a multiple comparison of means

North Carolina Designs I, II and III

Coefficient of the experiment variation

Omitting the rows or columns with missing observations of a matrix (NA)

Design of experiments for a factorial

Coefficient of the similarity matrix variation

Alpha design type (0,1)

Randomized Complete Block Design

Split Plot Design

Randomized Balanced Incomplete Block Designs. BIB

Data growth of trees

Lattice designs

Latin Square Design

Data in greenhouse

Graeco - latin square design

Cut tree of consensus

Strip Plot Design

Data of AUDPC for nonparametrical stability analysis

Incomplete Latin Square Design

Data evaluation of the disease overtime

groups of hclust

Class intervals

Join class for histogram

Duncan's new multiple range test

Data of potato, Heterosis

Data of molecular markers

Experimental design matrix

Data for Friedman test

Correlation of Kendall

Data of potato yield in a different environment

Friedman test and multiple comparison of treatments

Durbin test and multiple comparison of treatments

Plotting the multiple comparison of means

Median test. Multiple comparisons

Kruskal Wallis test and multiple comparison of treatments.

plot.graph.freq

The polygon of frequency on the histogram

Data of Paracsho biodiversity

Data Potato Wild

Data of cutting

Ordering the treatments according to the multiple comparison

Line x Tester Analysis

Grouping the treatments averages in a comparison with a minimum value

Plotting the multiple comparison of means

Nonadditivity model test

Resampling to find the optimal number of markers

Data of native potato

LATEBLIGHT - Simulator for potato late blight Version LB2004

Data for AMMI without repetition

AMMI index and yield stability

resampling.model

Resampling for linear models

Multiple comparisons, scheffe

Data of Grain yield of rice variety IR8

Uniformity soil. Smith's Index of Soil Heterogeneity

Data of soil analysis for 13 localities

Finding the skewness coefficient

Strip-Plot analysis

Splip-Plot analysis

Class intervals for a histogram, the rule of Sturges

Data of yield of melon in a Latin square experiment

Stability analysis. SHUKLA'S STABILITY VARIANCE AND KANG'S

Variance K, ties, Kendall

Descriptive measures of grouped data

Setting the last character of a chain

Finding the Kurtosis coefficient

Homologation of regressions

order plot in serpentine

Biodiversity Index

Data of assessment of the population in the soil R.solanacearum

Data: Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Peru

Multiple comparisons, Waller-Duncan

Data for an analysis in split-plot

Random generation by Montecarlo

Computations of Bayesian t-values for multiple comparisons

weatherSeverity

Weather and Severity

Plotting the ogive from a histogram

Normal curve on the histogram

Data clones from the PLRV population

stability.nonpar

Nonparametric stability analysis

Split-split-Plot analysis

Matrix of similarity in binary data

summary.graph.freq

frequency Table of a Histogram

simulation.model

Simulation of the linear model under normality

Statistics of data grouped by factors

frequency Table of a Histogram

Data of sweetpotato yield

Data of Bacterial Wilt (AUDPC) and soil

Finding the Variance Analysis of the Augmented block Design

Data for the analysis of carolina genetic design

Finding the Variance Analysis of the Balanced Incomplete Block Design

Data Glycoalkaloids

Data for late blight of potatoes

Multiple comparisons: Tukey

Data AUDPC Comas - Oxapampa

Data amendment Carhuaz 2006