alakazam (version 0.2.2)

translateDNA: Translate nucleotide sequences to amino acids

Description

translateDNA translates nucleotide sequences to amino acid sequences.

Usage

translateDNA(seq, trim = FALSE)

Arguments

seq

vector of strings defining DNA sequence(s) to be converted to translated.

trim

boolean flag to remove 3 nts from both ends of seq (converts IMGT junction to CDR3 region).

Value

• A vector of translated sequence strings.

See Also

translate.

Examples

library(alakazam)
# Load Change-O file
file <- system.file("extdata", "ExampleDb.gz", package="alakazam")
df <- readChangeoDb(file)

translateDNA(df$JUNCTION[1:3])
translateDNA(df$JUNCTION[1:3], trim=TRUE)
translateDNA("ACTGACTCGA")