ChangeoClone-class: S4 class defining a clone
Description
ChangeoClone defines a common data structure for perform lineage recontruction
from Change-O data.
Slots
data- data.frame containing sequences and annotations. Contains the
columns
SEQUENCE_ID and SEQUENCE, as well as any additional
sequence-specific annotation columns. clone- string defining the clone identifier.
germline- string containing the germline sequence for the clone.
v_gene- string defining the V segment gene call.
j_gene- string defining the J segment gene call.
junc_len- numeric junction length (nucleotide count).