allMT (version 0.1.1)

plot_progression: Graphical representation of maintenance therapy data for single patient

Description

Creates a line graph (trends) for absolute neutrophil count (ANC), 6-Mercaptopurine (6MP) and Methotrexate (MTX) doses across all visits for the given patient

Usage

plot_progression(input_file_path, anc_range, unit)

Value

plot image

Arguments

input_file_path

Path to input csv file for the patient (in quotes)

anc_range

ANC target range as per the protocol: (c(lower threshold, upper threshold)). NOTE: Ensure that units are the same as unit of ANC in the input data.

unit

Choose either "million" or "billion".

• "million" = million cells/L (x\(10^{6}\) cells/L or cells/\(\mu\)l)

• "billion" = billion cells/L (x\(10^{9}\) cells/L or x\(10^{3}\) cells/\(\mu\)l)

See Also

summarize_cycle_progression()

Examples

pat_data = system.file("extdata/processed_data/", "UPN_915.csv", package = "allMT")
plot_progression(input_file_path = pat_data, anc_range = c(0.75,1.5), unit = "billion")

# \donttest{
# As per BFM protocol (Reference PMID - 15902295):
plot_progression(input_file_path = "../UPN1.csv", anc_range = c(2, NA), unit = "billion")

# As per St Jude protocol (Reference PMID - 15902295):
plot_progression(input_file_path = "../../UPN1.csv", anc_range = c(0.3, 1), unit = "billion")
# }