allMT (version 0.1.1)

summarize_cycle_progression: Plot a cycle-specific summary graph of maintenance therapy (MT) data for single patient

Description

Create summary graph with maintenance therapy data. Weighted mean absolute neutrophil count (ANC) and dose information is calculated and plotted for each cycle.

Usage

summarize_cycle_progression(input_file_path, anc_range, unit)

Value

Plot image

Arguments

input_file_path

Path to input csv file for the patient (in quotes)

anc_range

ANC target range as per the protocol: (c(lower threshold, upper threshold)). NOTE: Ensure that units are the same as unit of ANC in the input data.

unit

Choose either "million" or "billion".

• "million" = million cells/L (x\(10^{6}\) cells/L or cells/\(\mu\)l)

• "billion" = billion cells/L (x\(10^{9}\) cells/L or x\(10^{3}\) cells/\(\mu\)l)

See Also

plot_progression()

Examples

pat_data = system.file("extdata/processed_data/", "UPN_916.csv", package = "allMT")
summarize_cycle_progression(input_file_path = pat_data, anc_range = c(0.75, 1.5),
                 unit = "billion")
# \donttest{
summarize_cycle_progression(input_file_path = pat_data,
                 anc_range = c(0.8, 2), unit = "billion")

# As per BFM protocol (Reference PMID - 15902295):
summarize_cycle_progression(input_file_path = pat_data,
                 anc_range = c(2, NA),
                 unit = "billion")

# As per St Jude protocol (Reference PMID - 15902295):
summarize_cycle_progression(input_file_path = pat_data,
                 anc_range = c(0.8, 2),
                 unit = "billion")

# }