dual_discrim_dual_likelihood

Frequency estimate of the putative dual-alpha clone

Vector containing the number of cells per well

numb_cells

Vector containing the number of wells with the sample
sizes given by <code>numb_cells</code>

numb_wells

Calculations of the needed binomial coefficients; this is
faster in R than in Rcpp (from my own tests)

binomials


<code>dual_discrim_dual_likelihood()</code> is used within <code><a rd-options="" href="/link/dual_top?package=alphabetr&version=0.2.2" data-mini-rdoc="alphabetr::dual_top">dual_top</a></code>
to calculate the likelihood that two alpha-beta pairs identified by
<code><a rd-options="" href="/link/bagpipe?package=alphabetr&version=0.2.2" data-mini-rdoc="alphabetr::bagpipe">bagpipe</a></code> sharing the same beta chain derive from a single
dual-alpha clone (instead of two distinct clones sharing the same beta).


Provides algorithms for frequency-based pairing of alpha-beta T
cell receptors.

Edward Lee

alphabetr

Algorithms for High-Throughput Sequencing of Antigen-Specific T
Cells

dual_discrim_dual_likelihood function


<code>dual_discrim_dual_likelihood()</code> is used within <code><a rd-options='' href='dual_top'>dual_top</a></code>
to calculate the likelihood that two alpha-beta pairs identified by
<code><a rd-options='' href='bagpipe'>bagpipe</a></code> sharing the same beta chain derive from a single
dual-alpha clone (instead of two distinct clones sharing the same beta).


dual_discrim_dual_likelihood: Calculate likelihood of two beta-sharing candidate alpha-beta pairs deriving from a dual clone

Description

Usage

Arguments

Value