amanida (version 0.3.0)

amanida_read: Import data

Description

amanida_read imports the data and formats for compute_amanida or amanida_vote functions

Usage

amanida_read(file, mode, coln, separator = NULL)

Value

tibble table with data imported

Arguments

file

path to file

mode

indicate if data will be quantitative or qualitative. Options are:

• "quan" for quantitative meta-analysis using p-value and fold-change

• "qual" for qualitative meta-analysis using trend label

coln

columns names to use. It has to be in order identification, p-values, fold-changes, sample size and reference.

separator

the separator used on file

Details

Note that amanida_read skips rows with missing values or NA. Negatives values for fold-change are transformed to positive (1/value).

Formats compatible are csv, xlsx, xls or txt.

Examples

coln <-  c("Compound Name", "P-value", "Fold-change", "N total", "References")
input_file <- getsampleDB()
datafile <- amanida_read(input_file, mode = "quan", coln, separator=";")