explore_plot

<code>explore_plot</code> creates a bar-plot showing the votes divided in up-regulated and down-regulated and the global result for each compound.

Combination of results for meta-analysis using significance
and effect size only. P-values and fold-change are combined to obtain
a global significance on each metabolite. Produces a volcano plot
summarising the relevant results from meta-analysis. Vote-counting
reports for metabolites. And explore plot to detect discrepancies
between studies at a first glance. Methodology is described in the
Llambrich et al. (2021) <doi:10.1093/bioinformatics/btab591>.

Maria Llambrich

amanida

Meta-Analysis for Non-Integral Data

Eudald Correig

Raquel Cumeras

explore_plot function

<dl><dt>data</dt>
<dd>an tibble obtained by <code>amanida_read</code> w/o names checked by <code>check_names</code></dd>
<dt>type</dt>
<dd>select the subset of data to plot. Options are:<ul>
<li>"all": all data will be displayed</li>
<li>"sub": only data over counts value will be displayed. Need counts value.</li>
<li>"mix": will display data over count value and elements with reports in both trends.Need counts value.</li>
</ul></dd>
<dt>counts</dt>
<dd>value of vote-counting cut-off. Will be only displayed data over the cut-off.</dd></dl>

Arguments

Plot for compounds divergence in reports — explore_plot

<dl>

<dt>data</dt>
<dd>an tibble obtained by <code>amanida_read</code> w/o names checked by <code>check_names</code></dd>


<dt>type</dt>
<dd>select the subset of data to plot. Options are:<ul>
<li>"all": all data will be displayed</li>
<li>"sub": only data over counts value will be displayed. Need counts value.</li>
<li>"mix": will display data over count value and elements with reports in both trends.Need counts value.</li>
</ul></dd>


<dt>counts</dt>
<dd>value of vote-counting cut-off. Will be only displayed data over the cut-off.</dd>

</dl>

explore_plot: Plot for compounds divergence in reports

Description

Usage

Value

Arguments

Details

Examples