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analogue (version 0.10-0)

analogue-package: Analogue methods for palaeoecology

Description

Fits Modern Analogue Technique transfer function models for prediction of environmental data from species data. Also performs analogue matching, a related technique used in palaeo ecological restoration.

Arguments

Details

ll{ Package: analogue Type: Package Version: 0.4-3 Date: 2007-09-15 Depends: R (>= 2.5.0), stats, graphics, vegan License: GPL Version 2 Built: R 2.5.1; ; 2007-08-03 13:44:47; unix }

Index: RMSEP Root mean square error of prediction analog Analogue matching analogue-package Analogue methods for palaeoecology bayesF Bayes factors bootstrap Bootstrap estimation and errors bootstrapObject Bootstrap object description cma Close modern analogues dissimilarities Extract dissimilarity coefficients from models distance Flexibly calculate dissimilarity or distance measures getK Extract and set the number of analogues join Merge species data sets on common columns (species) mat Modern Analogue Technique transfer function models mcarlo Monte Carlo simulation of dissimilarities minDC Extract minimum dissimilarities plot.bayesF Bayes factor plots plot.dissimilarities Plots the distribution of extracted dissimilarities plot.mat Plot diagnostics for a mat object plot.mcarlo Plott Monte Carlo simulated dissimilarity distributions plot.minDC Plot of minimum dissimilarity per sample plot.roc Plot ROC curves and associated diagnostics predict.mat Predict method for Modern Analogue Technique models reconPlot Stratigraphic plots of palaeoenvironmental reconstructions rlgh Round Loch of Glenhead Diatoms roc ROC curve analysis screeplot.mat Screeplots of model results summary.analog Summarise analogue matching results summary.bootstrap.mat Summarise bootstrap resampling for MAT models summary.cma Summarise the extraction of close modern analogues summary.mat Summarise Modern Analogue Technique models summary.predict.mat Summarise MAT model predictions swapdiat SWAP sub-fossil diatom training set swappH SWAP pH training set