Bayes factors
Histogram plot for residual lengths
Flexibly calculate dissimilarity or distance measures
Plot distribution of samples along gradient
Palaeoecological stratigraphic diagrams
Bootstrap object description
Calculate Hill's N2 diversity measure
Imbrie and Kipp foraminifera training set
Number of samples per gradient segments
Bootstrap estimation and errors for WA models
Extract minimum dissimilarities
Caterpillar plot of species' WA optima and tolerance range.
Select taxa (variables) on basis of maximum abundance attained
and number of occurrences.
North American Modern Pollen Database
Lattice histogram plot for residual lengths
Transfer function model performance statistics
Stratigraphic plots of palaeoenvironmental reconstructions
Merge species data sets on common columns (species)
Lattice density plot for residual lengths
Produces plots of analogue logistic regression models
Cross-validation of palaeoecological transfer function models
Extract dissimilarity coefficients from models
Species responses along gradients.
Rank correlation between environmental and species dissimilarities.
Standard error of MAT fitted and predicted values
Logistic regression models for assessing analogues/non-analogues
Modern Analogue Technique transfer function models
Extract and set the number of analogues
Plots the distribution of extracted dissimilarities
Positions of samples along a unit-length ordination gradient.
Plot diagnostics for a mat object
Plot species responses along gradients or latent variables
Monte Carlo simulation of dissimilarities
Squared residual length diagnostics
Plot Monte Carlo simulated dissimilarity distributions
Plot diagnostics for a weighted averaging model
Summarise Modern Analogue Technique models
Summarise the extraction of close modern analogues
Fitted values for the training set from logistic regression
models
Panel function for stratigraphic diagrams
Weighted averaging optima and tolerance ranges
Fused dissimilarities
Loess smooths to stratigraphic diagrams
Predict method for Modern Analogue Technique models
Plot method for residual lengths
Residuals of a principal curve fit.
Predicted values from a principal components regression
Prinicpal component regression transfer function models
Round Loch of Glenhead Diatoms
Plot a fitted principal curve in PCA space
Plot of minimum dissimilarity per sample
Smoother plugin function for use in fitting a principal curve
Predict news locations \& fitted values on a principal curve
Plot ROC curves and associated diagnostics
Fits a principal curve to m-dimensional data
Select samples from along an environmental gradient
Weighted averaging transfer functions
ROC curve analysis
Predict from a weighted average model
scores
method for principal curve objects of
class "prcurve"
.Summarise MAT model predictions
Weighted correlation test of WA reconstruction
Variance explained by ordination axes
Screeplots of model results
Common data transformations and standardizations
Posterior probability of analogue-ness for fossil samples
Summarise analogue matching results
Summarise bootstrap resampling for MAT models
SWAP sub-fossil diatom and pH training set
SWAP sub-fossil diatom and pH training set
Timetracks of change in species composition
Abernethy Forest Pollen Sequence
Deshrinking techniques for WA transfer functions
Analogue matching
Root mean square error of prediction
Close modern analogues
Bootstrap estimation and errors
Internal analogue Functions
Analogue and weighted averaging methods for palaeoecology
Compare proxies across two data sets