Index: analog Analogue matching bayesF Bayes factors bootstrap Bootstrap estimation and errors cma Close modern analogues dissimilarities Extract dissimilarity coefficients from models distance Flexibly calculate dissimilarity or distance measures fitted.mat Fitted values of a MAT model join Merge species data sets on common columns (species) getK Extract and set the number of analogues mat Modern Analogue Technique transfer function models mcarlo Monte Carlo simulation of dissimilarities plot.bayesF Bayes factor plots plot.cma Draws stripcharts of close modern analogue results plot.dissimilarities Plots the distribution of extracted dissimilarities plot.mat Plot diagnostics for a mat object plot.mcarlo Plotting of Monte Carlo simulated dissimilarity distributions plot.roc Plot ROC curves and associated diagnostics predict.mat Predict method for Modern Analogue Technique models reconPlot Stratigraphic plots of palaeoenvironmental reconstructions residuals.bootstrap.mat Extract Bootstrapped Model Residuals residuals.mat Extract Model Residuals rlgh Round Loch of Glenhead Diatoms roc ROC curve analysis screeplot.mat Screeplots of model results summary.analog Summarising analogue matching results summary.bootstrap.mat Summarising bootstrap resampling for MAT models summary.cma Summarising the extraction of close modern analogues summary.mat Summarising Modern Analogue Technique models summary.predict.mat Summarising MAT model predictions swapdiat SWAP sub-fossil diatom and pH training set swappH SWAP sub-fossil diatom and pH training set