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animint - DEPRECATED since July 2019
Please use
animint2
instead.
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Version
2017.01.04
2016.11.02
2016.08.21
2016.08.15
2016.08.14
2016.07.12
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Version
2017.01.04
License
GPL-3
Maintainer
Toby Dylan Hocking
Last Published
January 1st, 1970
Functions in animint (2017.01.04)
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animint-package
Interactive animations
animint2dir
Compile and render an animint in a local directory
climate
Climate data in central America from 1995 to 2000
ChromHMMiterations
ChromHMM iterations
animint2gist
Convert a list of ggplots to an interactive animation and post files as a gist
change
Graphical model structure change
breakpoints
The breakpointError of simulated signals
animintOutput
Shiny ui output function
generation.loci
Evolution simulation
geom_tallrect
ggplot2 geom with xmin and xmax aesthetics that covers the entire y range, useful for clickSelects background elements.
getLegendList
Function to get legend information from ggplot
getLegend
Function to get legend information for each scale
gg2animint
animint2dir
FunctionalPruning
Functional Pruning Algorithm
getCommonChunk
Save the common columns for each tsv to one chunk
geom_widerect
ggplot2 geom with ymin and ymax aesthetics that covers the entire x range, useful for clickSelects background elements.
compare
Testing rank and compare SVM on simulated patterns
intreg
Interval regression
makeDocs
Make documentation web site.
make_widerect
Make a clickSelects geom_widerect that completely tiles the y range. This makes it easy to construct widerects for the common case of selecting a particular y value.
prior
Class prior change
prostateLasso
Lasso model of the prostate cancer data set
WorldBank
Demographics by country from 1960 to 2012
tests_init
Initiate external processes necessary for running tests.
tests_exit
Kill child process(es) that may have been initiated in animint testing
worldPop
World population by subcontinent
selector.aes
Parse selectors from aes names.
scale_size_animint
Scale point sizes using circle area, but specifying the radius in pixels.
UStornadoes
Tornadoes in the United States from 1950 to 2012
VariantModels
Error rates of supervised learning methods for variant calling
varied.chunk
Extract subset for each data.frame in a list of data.frame
vervet
Vervet monkey intestinal microbiome
parsePlot
Convert a ggplot to a list.
mixtureKNN
K-Nearest-Neighbors model of the mixture example data
saveChunks
Split data set into chunks and save them to separate files.
saveLayer
Save a layer to disk, save and return meta-data.
transform_shape
Function to transform R shapes into d3 shapes...
toRGB
Convert R colors to RGB hexadecimal color values
malaria
Malaria parasite genome variants
merge_recurse
Merge a list of data frames.
split.x
Split data.frame into recursive list of data.frame.
TestROC
Test ROC curves
make_tallrect_or_widerect
Make a clickSelects geom_widerect or geom_tallrect that completely tiles the x or y range. This function is used internally by make_tallrect or make_widerect, which are more user-friendly.
make_bar
Convenience function for an interactive bar that might otherwise be created using stat_summary(geom="bar").
pirates
Worldwide pirate attacks from 1978 to 2013
knit_print.animint
Insert an interactive animation into an R markdown document using a customized print method.
is.rgb
Check if character is an RGB hexadecimal color value
PeakConsistency
Consistency of segmentation models in simulated Poisson peaks
make_tallrect
Make a clickSelects geom_tallrect that completely tiles the x range. This makes it easy to construct tallrects for the common case of selecting a particular x value.
make_text
Convenvience function for a showSelected plot label.
tests_run
Run animint tests
renderAnimint
Create an animint output element
theme_animint
theme for passing animint specific params
run_servr
Spawn a child R session that runs a 'blocking' command