annmap-package

annmap


  Annmap <a href="http://annmap.cruk.manchester.ac.uk">http://annmap.cruk.manchester.ac.uk</a> Is a genome annotation
  database and genome browser, based on the Google Maps API. The
  underlying annotation is derived from ENSEMBL
  (<a href="http://www.ensembl.org">http://www.ensembl.org</a>). Annmap also provides probe to genome
  mappings for Affymetrix Exon, Gene and Plus2 arrays.<p></p><p>  The annmap package makes the data in annmap available for use within
  R and BioConductor.
</p>

 package

annmap provides annotation mappings for Affymetrix exon
arrays and coordinate based queries to support deep sequencing
data analysis. Database access is hidden behind the API which
provides a set of functions such as genesInRange(),
geneToExon(), exonDetails(), etc. Functions to plot gene
architecture and BAM file data are also provided. Underlying
data are from Ensembl.

Chris Wirth

Genome annotation and visualisation package pertaining to
Affymetrix arrays and NGS analysis.

annmap-package function


  Annmap <a href = 'http://annmap.cruk.manchester.ac.uk'>http://annmap.cruk.manchester.ac.uk</a> Is a genome annotation
  database and genome browser, based on the Google Maps API. The
  underlying annotation is derived from ENSEMBL
  (<a href = 'http://www.ensembl.org'>http://www.ensembl.org</a>). Annmap also provides probe to genome
  mappings for Affymetrix Exon, Gene and Plus2 arrays.

  The annmap package makes the data in annmap available for use within
  R and BioConductor.


annmap-package: Provide access to the Annmap annotation database

Description

Arguments

Details

References

See Also