annovarR (version 1.0.0)

get.annotation.dbtype: Get annovarR default databases type [sqlite, txt]

Description

Get annovarR default databases type [sqlite, txt]

Usage

get.annotation.dbtype(anno.name = "", database.cfg = system.file("extdata",
  "config/databases.toml", package = "annovarR"))

Arguments

anno.name

Annotation name, eg. avsnp138, avsnp147, 1000g2015aug_all

database.cfg

Configuration file of annovarR databases infomation

Examples

Run this code
# NOT RUN {
get.annotation.dbtype('avsnp147') 
# }

Run the code above in your browser using DataLab