annovarR (version 1.0.0)

get.annotation.needcols: Get annovarR annotation needed colnames according the anno.name

Description

Get annovarR annotation needed colnames according the anno.name

Usage

get.annotation.needcols(anno.name = "",
  database.cfg = system.file("extdata", "config/databases.toml", package =
  "annovarR"))

Arguments

anno.name

Annotation name, eg. avsnp138, avsnp147, 1000g2015aug_all

database.cfg

Configuration file of annovarR databases infomation

Examples

# NOT RUN {
get.annotation.dbtype('avsnp147') 
# }