get_extinction_list

tree

<p>If set to TRUE (the default), all species have the same probability to go extinct first</p>

equal.ab

<p>Orders the tips which will sequentially get extinct/be sampled, based on relative species abundance as explained in the main text of the article.</p>

Simulation and analysis
of phylogenetic tree topologies using statistical indices. It
is a companion library of the 'ape' package. It provides
additional functions for reading, plotting, manipulating
phylogenetic trees. It also offers convenient web-access to
public databases, and enables testing null models of
macroevolution using corrected test statistics.  Trees of class
"phylo" (from 'ape' package) can be converted easily.
Implements methods described in Bortolussi et al. (2005)
<doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017)
<doi:10.1101/224295>.

get_extinction_list: Gives the tips of the phylogeny in their extinction order

Description

Usage

Arguments

References