hivtree.treeshape

<p>This data set describes an estimated clock-like phylogeny of 193 HIV-1.
group M sequences sampled in the Democratic Republic of Congo. This data is the conversion of the data from the APE package into the class <code>"treeshape"</code>.</p>

datasets

Simulation and analysis
of phylogenetic tree topologies using statistical indices. It
is a companion library of the 'ape' package. It provides
additional functions for reading, plotting, manipulating
phylogenetic trees. It also offers convenient web-access to
public databases, and enables testing null models of
macroevolution using corrected test statistics.  Trees of class
"phylo" (from 'ape' package) can be converted easily.
Implements methods described in Bortolussi et al. (2005)
<doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017)
<doi:10.1101/224295>.

Michael Blum

apTreeshape

Analyses of Phylogenetic Treeshape

hivtree.treeshape function

<p><code>hivtree.treeshape</code> is an object of class <code>"treeshape"</code>.</p>

hivtree.treeshape: Phylogenetic Tree of 193 HIV-1 Sequences

Description

Usage

Arguments

Format

References

Examples