theta.s

a numeric giving the number of segregating sites.

a numeric giving the length of the sequences (i.e. the number
    of sites under study).

a logical indicating whether the variance of the 
    estimated THETA should be returned (<code>TRUE</code>), thedefault being <code>FALSE</code>.

variance

This function computes the population parameter THETA using the
  number of segregating sites <code>s</code> in a sample of <code>n</code> DNA sequences.

manip

univar

Ape provides functions for reading, writing, and plotting
  phylogenetic trees in parenthetic format (standard Newick format),
  analyses of comparative data in a phylogenetic framework, analyses of
  diversification and macroevolution, computing distances from allelic
  and nucleotide data, reading nucleotide sequences from GenBank via
  internet, and several tools such  as Mantel's test, computation of
  minimum spanning tree, or the population parameter theta based on
  various approaches.

theta.s: Population Parameter THETA using Segregating Sites in DNA Sequences

Description

Usage

Arguments

Value

References

See Also