write.tree

a file name specified by either a variable of mode character,
    or a double-quoted string; if <code>file = ""</code>(the default) then the
    tree is written on the standard output connection.

file

a logical, if <code>TRUE</code> the tree is appended to the file
    without erasing the data possibly existing in the file, otherwise
    the file (if it exists) is overwritten (<code>FALSE</code> the default).

append

a character giving the format of the tree file; by
    default <code>"Newick"</code>. Currently only <code>"Newick"</code> is available.

format

This function writes in a file a tree in parenthetic format using the
  Newick or New Hampshire format.

manip

Ape provides functions for reading, writing, plotting,
  and manipulating phylogenetic trees, analyses of comparative data
  in a phylogenetic framework, analyses of diversification and
  macroevolution, computing distances from allelic and nucleotide
  data, reading nucleotide sequences, and several tools such as
  Mantel's test, computation of minimum spanning tree, the population
  parameter theta based on various approaches, generalized skyline plots,
  estimation of absolute evolutionary rates and clock-like
  trees using non-parametric rate smoothing, conversion of APE trees
  to and from hclust objects and for classifying genes in trees using
  the Klastorin-Misawa-Tajima approach.

write.tree: Write Tree File in Parenthetic Format

Description

Usage

Arguments

Value

Details

References

See Also