xenarthra

This phylogeny was inferred by maximum likelihood analysis of the
  nuclear gene BRCA1 (breast cancer susceptibility, 2788 sites)
  sequences for 47 placental and 3 marsupial taxa.

datasets

Ape provides functions for reading, writing, plotting,
  and manipulating phylogenetic trees, analyses of comparative data
  in a phylogenetic framework, analyses of diversification and
  macroevolution, computing distances from allelic and nucleotide
  data, reading nucleotide sequences, and several tools such as
  Mantel's test, computation of minimum spanning tree, the population
  parameter theta based on various approaches, nucleotide diversity,
  generalized skyline plots, estimation of absolute evolutionary rates
  and clock-like trees using non-parametric rate smoothing, conversion
  of APE trees to and from hclust objects and for classifying genes in
  trees using the Klastorin-Misawa-Tajima approach.

Emmanuel Paradis

Analyses of Phylogenetics and Evolution

xenarthra function

The data are stored as an object of class <code>"phylo"</code> which
  structure is described in the help page of the function
  <code><a href="/link/read.tree?package=ape&version=1.6" rd-options="" data-mini-rdoc="ape::read.tree">read.tree</a></code>.

format

Delsuc, F., Scally, M., Madsen, O., Stanhope, M. J., de Jong, W. W.,
  Catzeflis, F. M., Springer, M. S. and Douzery, E. J. P. (2002)
  Molecular phylogeny of living xenarthrans and the impact of character
  and taxon sampling on the placental tree rooting. <em>Molecular
    Biology and Evolution</em>, <b>19</b>, 1656--1671.

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xenarthra: Molecular Phylogeny of Living Xenarthrans

Description

Usage

Arguments

format

source

See Also

Examples