ape-internal

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Internal Ape Functions

Internal ape functions.

Keywords
internal
Note

These are not to be called by the user (or in some cases are just waiting for proper documentation to be written).

Aliases
  • tree.build
  • f.cherry.yule
  • f.cherry.uniform
  • sortIndex
  • nsca
  • perm.rowscols
  • mant.zstat
  • lower.triang
  • clado.build
  • getDurations
  • getEdgeLengths
  • getExternalParams
  • getNEdges
  • getNFreeParams
  • getRates
  • objFuncLogScale
  • optimTree
  • phylogram
  • prepareTree
  • setTree
  • buildTreeFromPhylo
  • destroyTree
  • getError
  • nEdges
  • nNodes
  • klastorin_nTips
  • getMisawaTajima
  • phylogram.plot
  • cladogram.plot
  • circular.plot
  • unrooted.plot
  • unrooted.xy
  • node.height
  • node.height.clado
  • birth.step
  • death.step
  • ht.move
  • loglik.pop
  • pos.move
  • BOTHlabels
  • chronopl.cv
  • prepareDNA
  • floating.pie.asp
  • checkLabel
  • getMRCA
Documentation reproduced from package ape, version 2.1-1, License: GPL (>= 2)

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