write.tree

a file name specified by either a variable of mode character,
    or a double-quoted string; if <code>file = ""</code> (the default) then the
    tree is written on the standard output connection (i.e. the console).

file

a logical, if <code>TRUE</code> the tree is appended to the file
    without erasing the data possibly existing in the file, otherwise
    the file (if it exists) is overwritten (<code>FALSE</code> the default).

append

a numeric giving the number of digits used for printing
    branch lengths.

digits

This function writes in a file a tree in parenthetic format using the
  Newick (also known as New Hampshire) format.

manip

ape provides functions for reading, writing, plotting,
  and manipulating phylogenetic trees, analyses of comparative data
  in a phylogenetic framework, analyses of diversification and
  macroevolution, computing distances from allelic and nucleotide
  data, reading nucleotide sequences, and several tools such as
  Mantel's test, computation of minimum spanning tree, the population
  parameter theta based on various approaches, nucleotide diversity,
  generalized skyline plots, estimation of absolute evolutionary rates
  and clock-like trees using mean path lengths, non-parametric rate
  smoothing and penalized likelihood, classifying genes in trees using
  the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
  with the NJ, BIONJ, ME, and ML methods.

write.tree: Write Tree File in Parenthetic Format

Description

Usage

Arguments

Value

Details

References

See Also