print.phylo

print.multiPhylo

[.multiPhylo

[[.multiPhylo

$.multiPhylo

str.multiPhylo

an object of class <code>"phylo"</code> or <code>"multiPhylo"</code>.

an object of class <code>"multiPhylo"</code>.

object

the number of labels to print (6 by default).

printlen

a logical indicating whether to print information on
    all trees.

details

indices of the tree(s) to select from a list; this may be a
    vector of integers, logicals, or names.

a character string specifying the tree to be extracted.

name

further arguments passed to or from other methods.

These functions prints a compact summary of a phylogeny, or a list of,
  on the console.<p></p><p>  The operators <code>[</code>, <code>[[</code>, and <code>$</code> propagate the class
  correctly.</p>

manip

ape provides functions for reading, writing, plotting,
  and manipulating phylogenetic trees, analyses of comparative data
  in a phylogenetic framework, analyses of diversification and
  macroevolution, computing distances from allelic and nucleotide
  data, reading nucleotide sequences, and several tools such as
  Mantel's test, computation of minimum spanning tree, the population
  parameter theta based on various approaches, nucleotide diversity,
  generalized skyline plots, estimation of absolute evolutionary rates
  and clock-like trees using mean path lengths, non-parametric rate
  smoothing and penalized likelihood, classifying genes in trees using
  the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
  with the NJ, BIONJ, ME, and ML methods.

print.phylo: Compact Display of a Phylogeny

Description

Usage

Arguments

Value

See Also