ape-package: Analyses of Phylogenetics and Evolution
Description
ape provides functions for reading and manipulating phylogenetic
trees and DNA sequences, computing DNA distances, estimating trees
with distance-based methods, and a range of methods for comparative
analyses and analysis of diversification. Functionalities are also
provided for programming new phylogenetic methods.
The complete list of functions can be displayed with
library(help = ape).
More information on ape can be found at http://ape.mpl.ird.fr/.
Arguments
References
Paradis, E. (2006) Analyses of Phylogenetics and Evolution with
R. Springer, New York.
Paradis, E., Claude, J. and Strimmer, K. (2004) APE: analyses of
phylogenetics and evolution in R language. Bioinformatics,
20, 289--290.