opsin

0th

Percentile

Gene Tree of 32 opsin Sequences

This data set describes a gene tree estimated from 32 opsin sequences.

Keywords
datasets
Usage
data(opsin.newick)
format

opsin.newick is a string with the tree in Newick format.

source

This tree is described in Misawa and Tajima (2000) as an example for application of the Klastorin (1982) classification method.

References

Misawa, K. (2000) A simple method for classifying genes and a bootstrap test for classifications. Molecular Biology and Evolution, 17, 1879--1884.

Aliases
  • opsin
  • opsin.newick
Examples
# example tree in NH format (a string)
data("opsin.newick")
opsin.newick

# get corresponding phylo object
tree.opsin <- read.tree(text = opsin.newick)

# plot tree
plot(tree.opsin, label.offset = 0.01)
Documentation reproduced from package ape, version 2.6-3, License: GPL (>= 2)

Community examples

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