GC.content

0th

Percentile

Content in GC from DNA Sequences

This function computes the percentage of G+C in a sample of DNA sequences.

Keywords
univar
Usage
GC.content(x)
Arguments
x
a vector, a matrix, a data frame, or a list which contains the DNA sequences.
Details

The percentage of G+C is computed over all sequences in the sample. All missing or unknown sites are discarded from the computations. The present function actually uses the function base.freq.

Value

  • A single numeric value is returned.

See Also

base.freq, seg.sites, nuc.div

Aliases
  • GC.content
Documentation reproduced from package ape, version 2.7-3, License: GPL (>= 2)

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