cophenetic.phylo

0th

Percentile

Pairwise Distances from a Phylogenetic Tree

cophenetic.phylo computes the pairwise distances between the pairs of tips from a phylogenetic tree using its branch lengths.

dist.nodes does the same but between all nodes, internal and terminal, of the tree.

Keywords
manip
Usage
## S3 method for class 'phylo':
cophenetic(x)
dist.nodes(x)
Arguments
x
an object of class "phylo".
Value

  • a numeric matrix with colnames and rownames set to the names of the tips (as given by the element tip.label of the argument phy), or, in the case of dist.nodes, the numbers of the tips and the nodes (as given by the element edge).

See Also

read.tree to read tree files in Newick format, cophenetic for the generic function

Aliases
  • cophenetic.phylo
  • dist.nodes
Documentation reproduced from package ape, version 3.2, License: GPL (>= 2)

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