del.gaps

0th

Percentile

Delete Alignment Gaps in DNA Sequences

This function removes the insertion gaps ("-") in a sample of DNA sequences.

Keywords
univar
Usage
del.gaps(x)
Arguments
x
a matrix, a list, or a vector containing the DNA sequences.
Details

The sequences can be either in "DNAbin" or in character format, but the returned object is always of class "DNAbin". If x is a vector, then a vector is returned; if it is a list or a matrix, then a list is returned.

Value

  • A vector (if there is only one input sequence) or a list of class "DNAbin".

See Also

base.freq, GC.content, seg.sites, image.DNAbin

Aliases
  • del.gaps
Documentation reproduced from package ape, version 3.2, License: GPL (>= 2)

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