del.gaps

From ape v3.2
0th

Percentile

Delete Alignment Gaps in DNA Sequences

This function removes the insertion gaps ("-") in a sample of DNA sequences.

Keywords
univar
Usage
del.gaps(x)
Arguments
x
a matrix, a list, or a vector containing the DNA sequences.
Details

The sequences can be either in "DNAbin" or in character format, but the returned object is always of class "DNAbin". If x is a vector, then a vector is returned; if it is a list or a matrix, then a list is returned.

Value

• A vector (if there is only one input sequence) or a list of class "DNAbin".

base.freq, GC.content, seg.sites, image.DNAbin