DNAbin2indel

0th

Percentile

Recode Blocks of Indels

This function scans a set of aligned DNA sequences and returns a matrix with information of the localisations and lengths on alignment gaps.

Keywords
manip
Usage
DNAbin2indel(x)
Arguments
x

an object of class "DNAbin".

Details

The output matrix has the same dimensions than the input one with, either a numeric value where an alignment gap starts giving the length of the gap, or zero. The rownames are kept.

Value

a numeric matrix.

See Also

DNAbin, as.DNAbin, del.gaps, seg.sites, image.DNAbin, checkAlignment

Aliases
  • DNAbin2indel
Documentation reproduced from package ape, version 5.3, License: GPL (>= 2)

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