print

print.PHMM

print.HMM

print.DPA

Designed for the development and application of
hidden Markov models and profile HMMs for biological sequence analysis.
Contains functions for multiple and pairwise sequence alignment,
model construction and parameter optimization, file import/export,
implementation of the forward, backward and Viterbi algorithms for
conditional sequence probabilities, tree-based sequence weighting,
and sequence simulation.
Features a wide variety of potential applications including
database searching, gene-finding and annotation, phylogenetic
analysis and sequence classification.
Based on the models and algorithms described in Durbin et
al (1998, ISBN: 9780521629713).

Shaun Wilkinson

aphid

Analysis with Profile Hidden Markov Models

print function

<dl><dt>x</dt>
<dd>object of various classes.</dd>
<dt>...</dt>
<dd>additional arguments to be passed between methods.</dd></dl>

Arguments

Author

Print summary methods. — print

<dl>

<dt>x</dt>
<dd>object of various classes.</dd>


<dt>...</dt>
<dd>additional arguments to be passed between methods.</dd>

</dl>

Print summary methods.

print: Print summary methods.

Description

Usage

Value

Arguments

Author