oncoplot_components

Build the reusable panels and tidy data used by <code>oncoplot()</code>.
This function is intended for downstream packages that want to assemble
an oncoplot with additional tracks while reusing the aplotExtra mutation
matrix, sample burden, gene burden, and mutation color mapping.

Many complex plots are actually composite plots, such as 'oncoplot', 'funkyheatmap', 'upsetplot', etc. We can produce subplots using 'ggplot2' and combine them to create composite plots using 'aplot'. In this way, it is easy to customize these complex plots, by adding, deleting or modifying subplots in the final plot. This package provides a set of utilities to help users to create subplots and complex plots.

Guangchuang Yu

aplotExtra

Creating Composite Plots using 'aplot'

Shuangbin Xu

Chun-Hui Gao

Shensuo Li

oncoplot_components function

<dl><dt>maf</dt>
<dd>A MAF object.</dd>
<dt>genes</dt>
<dd>The gene names or number of top mutated genes.</dd></dl>

Arguments

Get reusable oncoplot components — oncoplot_components

<dl>

<dt>maf</dt>
<dd>A MAF object.</dd>


<dt>genes</dt>
<dd>The gene names or number of top mutated genes.</dd>

</dl>

oncoplot_components: Get reusable oncoplot components

Description

Usage

Value

Arguments