apollo (version 0.3.6)

apollo_validateHBControl: Validates the apollo_HB list of parameters

Description

Validates the apollo_HB list of parameters and sets default values for the omitted ones.

Usage

apollo_validateHBControl(
  apollo_HB,
  apollo_beta,
  apollo_fixed,
  apollo_control,
  silent = FALSE
)

Value

Validated apollo_HB

Arguments

apollo_HB

List. Contains options for Bayesian estimation. See ?RSGHB::doHB for details. Parameters modelname, gVarNamesFixed, gVarNamesNormal, gDIST, svN and FC are automatically set based on the other arguments of this function. Other settings to include are the following.

• constraintsNorm: Character vector. Constraints for random coefficients in bayesian estimation. Constraints can be written as "b1>b2", "b1<b2", "b1>0", or "b1<0".

• fixedA: Named numeric vector. Contains the names and fixed mean values of random parameters. For example, c(b1=0) fixes the mean of b1 to zero.

• fixedD: Named numeric vector. Contains the names and fixed variance of random parameters. For example, c(b1=1) fixes the variance of b1 to zero.

• gFULLCV: Boolean. Whether the full variance-covariance structure should be used for random parameters (TRUE by default).

• gNCREP: Numeric. Number of burn-in iterations to use prior to convergence (default=10^5).

• gNEREP: Numeric. Number of iterations to keep for averaging after convergence has been reached (default=10^5).

• gINFOSKIP: Numeric. Number of iterations between printing/plotting information about the iteration process (default=250).

• hbDist: Mandatory setting. A named character vector determining the distribution of each parameter to be estimated. Possible values are as follows.

  • "CN+": Positive censored normal.

  • "CN-": Negative censored normal.

  • "JSB": Johnson SB.

  • "LN+": Positive log-normal.

  • "LN-": Negative log-normal.

  • "N": Normal.

  • "NR": Fixed (as in non-random) parameter.

• nodiagnostics: Boolean. Turn off pre-estimation diagnostics for RSGHB. Set to TRUE by default.

apollo_beta

Named numeric vector. Names and values for parameters.

apollo_fixed

Character vector. Names (as defined in apollo_beta) of parameters whose value should not change during estimation. value is constant throughout estimation).

apollo_control

List. Options controlling the running of the code. See apollo_validateInputs.

silent

Boolean. TRUE to keep the function from printing to the console. Default is FALSE.

Details

This function is only necessary when using bayesian estimation.