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appnn (version 1.0-1)

appnn: Prediction of the amyloidogenicity propensity for polypeptide sequences.

Description

This function predicts the amyloidfogenicity propensity of polypeptide sequences through the amyloid propensity prediction neural network (APPNN).

Usage

# S3 method for default
appnn(sequences)

Value

A list containing the amyloidogenicity propensity predictions for the polypeptides queried.

overall

The overall amyloidogenicity propensity prediction value for the sequence

aminoacids

The amyloidogenicity propensity prediction value per amino acid

hotspots

A list of the amyloidogenic hotspots predicted in the sequence, limited by the first and last amino acid

Arguments

sequences

vector of sequences to submit to amyloidogenicity propension prediction neural network

Author

Carlos Família, Sarah R. Dennison, Alexandre Quintas, David A. Phoenix

Examples

Run this code
sequences <- c('STVIIE','KKSSTT','KYSTVI')
predictions <- appnn(sequences)

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