aqp (version 1.9.2)

groupedProfilePlot: Grouped Soil Profile Plot

Description

Plot a collection of soil profiles, sorted and labeled by group.

Usage

groupedProfilePlot(x, groups, group.name.offset = -5, 
group.name.cex = 0.75, group.line.col = "RoyalBlue", 
group.line.lwd = 2, group.line.lty = 2, break.style='line', 
arrow.offset=group.name.offset + 5, arrow.length=0.1, ...)

Arguments

x

a SoilProfileCollection object

groups

the name of a site-level attribute that defines groups, factor levels will influence plotting order

group.name.offset

vertical offset for group names, single numeric value or vector of offsets

group.name.cex

font size for group names

group.line.col

color for line that splits groups

group.line.lwd

width of line that splits groups

group.line.lty

style of line that splits groups

break.style

style of group boundaries: "line", "arrow", "both"

arrow.offset

vertical offset for "arrow" style boundaries, single numeric value or vector of offsets

arrow.length

value passed to arrows to define arrow head size

...

further arguments to plotSPC

Details

The ordering of groups can be adjusted by converting the site-level attribute used for grouping into a factor and explicitly setting the levels.

See Also

plotSPC

Examples

# sample data
data(sp1)
# convert colors from Munsell to hex-encoded RGB
sp1$soil_color <- with(sp1, munsell2rgb(hue, value, chroma))

# promote to SoilProfileCollection
depths(sp1) <- id ~ top + bottom
site(sp1) <- ~ group

# plot profiles, sorted and annotated by 'group'
par(mar=c(1,1,1,1))
groupedProfilePlot(sp1, groups='group', max.depth=150, group.name.offset = -12, id.style='side')

# make fake site-level attribute and adjust levels
sp1$new.group <- sample(letters[1:3], size=length(sp1), replace=TRUE)

# tabulate pedons / group
tab <- table(sp1$new.group)

# sort large -> small
tab <- sort(tab, decreasing = TRUE)

# set levels based on sorted tabulation
# assign custom labels
sp1$new.group <- factor(sp1$new.group, levels=names(tab), 
labels=paste0(names(tab), '(', tab, ')'))
groupedProfilePlot(sp1, groups='new.group', max.depth=150, 
group.name.offset = -10, id.style='side')

# offsets can be set using a vector of values, recycled as needed
groupedProfilePlot(sp1, groups='new.group', max.depth=150, 
group.name.offset=c(-10, -5), id.style='side')

# annotate with arrows instead of vertical lines
groupedProfilePlot(sp1, groups='new.group', max.depth=150, 
group.name.offset=c(-10, -12), break.style='arrow', arrow.offset=-3, 
group.line.lty = 1, group.line.lwd = 1, id.style='side')

# more complete example using data from soilDB package
data(loafercreek, package='soilDB')
par(mar=c(1,1,1,1))
# lines
groupedProfilePlot(loafercreek, groups='hillslope_pos', group.name.cex = 0.5, 
group.name.offset = -10)

# arrows
groupedProfilePlot(loafercreek, groups='hillslope_pos', group.name.cex = 0.5, 
group.name.offset = -10, break.style ='arrow', group.line.lty = 1, 
group.line.lwd = 1)

# both
groupedProfilePlot(loafercreek, groups='hillslope_pos', group.name.cex = 0.5, 
group.name.offset = -10, break.style ='both', group.line.lty = 1, 
group.line.lwd = 1)