webanno_summary

A Python based pipeline for extraction of species occurrence data through the usage of large language models. Includes validation tools designed to handle model hallucinations for a scientific, rigorous use of LLM. Currently supports usage of GPT with more planned, including local and non-proprietary models. For more details on the methodology used please consult the references listed under each function, such as Kent, A. et al. (1995) <doi:10.1002/asi.5090060209>, van Rijsbergen, C.J. (1979, ISBN:978-0408709293, Levenshtein, V.I. (1966) <https://nymity.ch/sybilhunting/pdf/Levenshtein1966a.pdf> and Klaus Krippendorff (2011) <https://repository.upenn.edu/handle/20.500.14332/2089>.

Vasco V. Branco

arete

Automated REtrieval from TExt

Vaughn Shirey

Thomas Merrien

Pedro Cardoso

webanno_summary function

<dl><dt>input</dt>
<dd>list of character or WebAnnoTSV. The contents of WebAnno TSV v3.3 files 
as created by <code>webanno_open</code> or a set of
paths leading to them.</dd>
<dt>goal</dt>
<dd>character. One of "labels", "relations" or "all" determining what is summarized.</dd>
<dt>collected</dt>
<dd>boolean. Organize the summary under a single dataframe, otherwise a list is returned.</dd>
<dt>verbose</dt>
<dd>boolean. Print the final output.</dd></dl>

Arguments

Summarize the contents of a group of WebAnno tsv files — webanno_summary

<dl>

<dt>input</dt>
<dd>list of character or WebAnnoTSV. The contents of WebAnno TSV v3.3 files 
as created by <code>webanno_open</code> or a set of
paths leading to them.</dd>


<dt>goal</dt>
<dd>character. One of "labels", "relations" or "all" determining what is summarized.</dd>


<dt>collected</dt>
<dd>boolean. Organize the summary under a single dataframe, otherwise a list is returned.</dd>


<dt>verbose</dt>
<dd>boolean. Print the final output.</dd>

</dl>

webanno_summary: Summarize the contents of a group of WebAnno tsv files

Description

Usage

Value

Arguments

Examples