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arf3DS4 (version 2.5-4)

setRegFiles: Set registration files.

Description

Link the files necessary for registration to the appropriate slots in the registration object. Registration requires a working copy of FSL. Files must be copied from the FSL directory to the /registration directory of the ARF experiment. By default the standard filenames used by FSL are used.

Usage

setRegFiles(registration, examp2stand = "example_func2standard.mat", 
 examp2high = "example_func2highres.mat", high2stand = "highres2standard.mat", 
 example_func = "example_func.nii.gz", highres = "highres.nii.gz", 
 standard = "standard.nii.gz")

Arguments

registration
Object of class registration to link to.
examp2stand
ARF to standard space affine transformation matrix file.
examp2high
ARF to high resolution affine transformation matrix file.
high2stand
High resolution to standard space affine transformation matrix file.
example_func
Nifti file in ARF native space.
highres
T1 weighted structural image.
standard
Standard space image (MNI152).

Value

  • Returns a registration object with the appropriate slots filled.

References

See http://www.fmrib.ox.ac.uk/fsl/ on how to obtain FSL and licences.

See Also

registration, createRegs, setRegParams