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aroma.affymetrix (version 1.6.0)

AffymetrixCelSetTuple: The AffymetrixCelSetTuple class

Description

Package: aroma.affymetrix Class AffymetrixCelSetTuple Object ~~| ~~+--FullNameInterface ~~~~~~~| ~~~~~~~+--GenericDataFileSetList ~~~~~~~~~~~~| ~~~~~~~~~~~~+--AromaMicroarrayDataSetTuple ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AffymetrixCelSetTuple Directly known subclasses: ChipEffectSetTuple, CnChipEffectSetTuple public static class AffymetrixCelSetTuple extends AromaMicroarrayDataSetTuple

Usage

AffymetrixCelSetTuple(..., .setClass="AffymetrixCelSet")

Arguments

...
Arguments passed to the constructor of AromaMicroarrayDataSetTuple.
.setClass
The name of the class of the input set.

Fields and Methods

Methods: rll{ byPath - } Methods inherited from AromaMicroarrayDataSetTuple: as, as.AromaMicroarrayDataSetTuple, byPath, getAsteriskTags, getChipTypes, getFullNames, getSets, getTags, indexOf, nbrOfArrays, nbrOfChipTypes Methods inherited from GenericDataFileSetList: as.character, as.data.frame, as, as.GenericDataFileSetList, as.list, assertDuplicates, clone, extract, getAsteriskTags, getDefaultFullName, getFileList, getFileListClass, getFullNames, getNames, getSet, getSets, getTags, indexOf, length, nbrOfFiles, nbrOfSets, setTags Methods inherited from FullNameInterface: appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save