CnagCfhSet: The CnagCfhSet class
Description
Package: aroma.affymetrix
Class CnagCfhSet
Object
~~|
~~+--FullNameInterface
~~~~~~~|
~~~~~~~+--GenericDataFileSet
~~~~~~~~~~~~|
~~~~~~~~~~~~+--CnagCfhSet
Directly known subclasses:
public static class CnagCfhSet
extends GenericDataFileSet
An CnagCfhSet object represents a set of CNAG CFH files
with identical chip types.Usage
CnagCfhSet(files=NULL, ...)
Fields and Methods
Methods:
rll{
[ -
[[ -
append -
as -
as.CnagCfhSet Coerce an object to an CnagCfhSet object.
byName -
byPath -
findByName -
getAverage -
getAverageAsinh -
getAverageFile Calculates the mean and the standard deviation of the cell signal (intensity, standard deviation etc.) across the CFH set.
getAverageLog -
getCdf Gets the CDF structure for this CFH set.
getData -
getDefaultFullName -
getTimestamps -
isDuplicated Identifies duplicated CFH files.
nbrOfArrays Gets the number of arrays in the file set.
range -
readUnits -
setCdf Sets the CDF structure for this CFH set.
}
Methods inherited from GenericDataFileSet:
getParentName, append, appendFiles, appendFullNamesTranslator, appendFullNamesTranslatorByfunction, appendFullNamesTranslatorBylist, appendFullNamesTranslatorByNULL, as.list, byName, byPath, clearCache, clearFullNamesTranslator, copyTo, equals, extract, findByName, getAlias, getDefaultFullName, getFile, getFileClass, getFileSize, getFullNames, getNames, getPath, getPathnames, hasFile, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullNamesTranslator, update2, updateFullName, updateFullNames, validate
Methods inherited from FullNameInterface:
appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save