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aroma.affymetrix (version 1.6.0)

CrlmmParametersSet: The CrlmmParametersSet class

Description

Package: aroma.affymetrix Class CrlmmParametersSet Object ~~| ~~+--FullNameInterface ~~~~~~~| ~~~~~~~+--GenericDataFileSet ~~~~~~~~~~~~| ~~~~~~~~~~~~+--GenericTabularFileSet ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AromaTabularBinarySet ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--AromaUnitSignalBinarySet ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--CrlmmParametersSet Directly known subclasses: public static class CrlmmParametersSet extends AromaUnitSignalBinarySet An CrlmmParametersSet object represents a set of CrlmmParametersFiles with identical chip types.

Usage

CrlmmParametersSet(...)

Arguments

...
Arguments passed to AromaUnitSignalBinarySet.

Fields and Methods

Methods: rll{ byName - byPath - findUnitsTodo - } Methods inherited from AromaUnitSignalBinarySet: byName, findByName, getAromaUgpFile, getChipType, getPlatform, validate, writeDataFrame Methods inherited from AromaTabularBinarySet: getDefaultFullName, getRootName, setAttributesBy, setAttributesBySampleAnnotationFile, setAttributesBySampleAnnotationSet, setAttributesByTags Methods inherited from GenericTabularFileSet: calculateAverageColumnAcrossFiles, extractMatrix Methods inherited from GenericDataFileSet: getParentName, append, appendFiles, appendFullNamesTranslator, appendFullNamesTranslatorByfunction, appendFullNamesTranslatorBylist, appendFullNamesTranslatorByNULL, as.list, byName, byPath, clearCache, clearFullNamesTranslator, copyTo, equals, extract, findByName, getAlias, getDefaultFullName, getFile, getFileClass, getFileSize, getFullNames, getNames, getPath, getPathnames, hasFile, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullNamesTranslator, update2, updateFullName, updateFullNames, validate Methods inherited from FullNameInterface: appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save