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aroma.affymetrix (version 1.6.0)

GcContentNormalization2: The GcContentNormalization2 class

Description

Package: aroma.affymetrix Class GcContentNormalization2 Object ~~| ~~+--AromaTransform ~~~~~~~| ~~~~~~~+--Transform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--ChipEffectTransform ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AdditiveCovariatesNormalization ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--GcContentNormalization2 Directly known subclasses: public static class GcContentNormalization2 extends AdditiveCovariatesNormalization This class represents a normalization method that corrects for annotation-data covariate effects on copy-number chip-effect estimates.

Usage

GcContentNormalization2(...)

Arguments

...
Arguments passed to the constructor of AdditiveCovariatesNormalization.

Fields and Methods

Methods: rll{ plotCovariateEffects - } Methods inherited from AdditiveCovariatesNormalization: clearCache, getCdf, getCovariates, getOutputDataSet00, process Methods inherited from Transform: getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles Methods inherited from AromaTransform: getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save