AffymetrixCelSetTuple: The AffymetrixCelSetTuple class

Description

Package: aroma.affymetrix Class AffymetrixCelSetTuple Object ~~| ~~+--FullNameInterface ~~~~~~~| ~~~~~~~+--GenericDataFileSetList ~~~~~~~~~~~~| ~~~~~~~~~~~~+--AromaMicroarrayDataSetTuple ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AffymetrixCelSetTuple Directly known subclasses: ChipEffectSetTuple, CnChipEffectSetTuple public static class AffymetrixCelSetTuple extends AromaMicroarrayDataSetTuple

Usage

AffymetrixCelSetTuple(..., .setClass="AffymetrixCelSet")

Arguments

...

Arguments passed to the constructor of AromaMicroarrayDataSetTuple.

.setClass

The name of the class of the input set.

Fields and Methods

Methods: rll{ byPath - }

Methods inherited from AromaMicroarrayDataSetTuple: as, as.AromaMicroarrayDataSetTuple, byPath, getAsteriskTags, getChipTypes, getFullNames, getSets, getTags, indexOf, nbrOfArrays, nbrOfChipTypes

Methods inherited from GenericDataFileSetList: as, as.GenericDataFileSetList, as.character, as.data.frame, as.list, assertDuplicates, clone, extract, getAsteriskTags, getDefaultFullName, getFileList, getFileListClass, getFullNames, getNames, getSet, getSets, getTags, indexOf, length, nbrOfFiles, nbrOfSets, setTags

Methods inherited from FullNameInterface: appendFullNameTranslator, appendFullNameTranslatorByNULL, appendFullNameTranslatorByTabularTextFile, appendFullNameTranslatorByTabularTextFileSet, appendFullNameTranslatorBycharacter, appendFullNameTranslatorBydata.frame, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, resetFullName, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis