ArrayExplorer: The ArrayExplorer class

Description

Package: aroma.affymetrix Class ArrayExplorer Object ~~| ~~+--Explorer ~~~~~~~| ~~~~~~~+--ArrayExplorer Directly known subclasses: public abstract static class ArrayExplorer extends Explorer

Usage

ArrayExplorer(csTuple=NULL, ...)

Arguments

csTuple

An AffymetrixCelSet object.

...

Not used.

Fields and Methods

Methods: rll{ addColorMap - getColorMaps - getDataSet Gets the data set. getSetTuple - nbrOfChipTypes - process Generates image files, scripts and dynamic pages for the explorer. setArrays Sets the arrays. setColorMaps - }

Methods inherited from Explorer: addIncludes, addIndexFile, as.character, display, getAlias, getArraysOfInput, getAsteriskTags, getFullName, getIncludePath, getMainPath, getName, getNameOfInput, getNames, getParallelSafe, getPath, getReportPathPattern, getRootPath, getSampleLayerPrefix, getSubname, getTags, getTagsOfInput, getTemplatePath, getVersion, nbrOfArrays, process, setAlias, setArrays, setParallelSafe, setReportPathPattern, setSubname, setup, splitByReportPathPattern, updateSetupExplorerFile

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis