SmoothRmaModel: The SmoothRmaModel class

Description

Package: aroma.affymetrix Class SmoothRmaModel Object ~~| ~~+--ChromosomalModel ~~~~~~~| ~~~~~~~+--SmoothMultiarrayModel ~~~~~~~~~~~~| ~~~~~~~~~~~~+--SmoothRmaModel Directly known subclasses: public abstract static class SmoothRmaModel extends SmoothMultiarrayModel This class represents the Chromosomal Smoothing Robust Multichip Analysis method.

Usage

SmoothRmaModel(...)

Arguments

...

Arguments passed to the constructor of SmoothMultiarrayModel.

Fields and Methods

Methods: No methods defined.

Methods inherited from SmoothMultiarrayModel: as.character, createOutputTuple, fitOneChromosome, getAsteriskTags, getBandwidth, getFitUnitGroupFunction, getOutputTuple, getRootPath, setBandwidth

Methods inherited from ChromosomalModel: as.character, fit, getAlias, getAromaGenomeTextFile, getAsteriskTags, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getName, getNames, getParentPath, getPath, getReportPath, getRootPath, getSetTuple, getSets, getTags, indexOf, nbrOfArrays, nbrOfChipTypes, setChromosomes, setGenome, getListOfGenomeInformations, getPcuTheta, getPositionChipTypeUnit

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis