aroma.affymetrix (version 2.11.1)

bgAdjustRma.AffymetrixCelFile: Applies normExp background correction to a CEL file

Description

Applies normExp background correction to a CEL file.

Calls bg.adjust from the affy package.

Usage

## S3 method for class 'AffymetrixCelFile':
bgAdjustRma(this, path, pmonly=TRUE, addJitter=FALSE, jitterSd=0.2, overwrite=FALSE,
  skip=!overwrite, ..., verbose=FALSE, .deprecated=TRUE)

Arguments

path

The path where to save the adjusted data files.

overwrite

If TRUE, already adjusted arrays are overwritten, unless skipped, otherwise an error is thrown.

skip

If TRUE, the array is not normalized if it already exists.

verbose

See Verbose.

...

Not used.

.deprecated

Internal argument.

Value

• Returns the background adjusted AffymetrixCelFile object.

See Also

bg.adjust For more information see AffymetrixCelFile.