aroma.affymetrix (version 2.11.1)

plotDensity.AffymetrixCelFile: Plots the density of the probe signals on the array

Description

Plots the density of the probe signals on the array.

Usage

## S3 method for class 'AffymetrixCelFile':
plotDensity(this, subset=NULL, types=NULL, ..., xlim=c(0, 16), xlab=NULL,
  ylab="density (integrates to one)", log=TRUE, annotate=TRUE, verbose=FALSE)

Arguments

subset

The subset of probes to considered before any filtering by probe type is applied. If a vector of doubles, the cell indices. If a s

types

The type of probes to include, e.g. "all", "pmmm", "pm", and "mm".

...

Additional arguments passed to plotDensity.numeric.

xlim

The range on the x axis.

xlab,ylab

The labels on the x and the y axes.

log

If TRUE, the density of the log (base 2) values are used, otherwise the non-logged values.

verbose

A logical or a Verbose object.

Value

• Returns nothing.

See Also

For more information see AffymetrixCelFile.