convert.AffymetrixCdfFile

AffymetrixCdfFile.convert

convert,AffymetrixCdfFile-method

chipType

A suffix added to the chip type of the new CDF.

suffix

A string separating the chip type and the suffix string.

The path where to store the new CDF file.

path

Additional arguments passed to <code><a href="/link/convertCdf?package=aroma.affymetrix&version=2.5.0&to=affxparser" rd-options="affxparser" data-mini-rdoc="affxparser::convertCdf">convertCdf</a></code>.

A <code><a href="/link/logical?package=aroma.affymetrix&version=2.5.0&to=base" rd-options="base" data-mini-rdoc="base::logical">logical</a></code> or <code><a href="/link/Verbose?package=aroma.affymetrix&version=2.5.0&to=R.utils" rd-options="R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose

Converts a CDF into the same CDF but with another format.

methods

internal

This package implements classes for files and sets of
        files for various Affymetrix file formats, e.g.
        AffymetrixCdfFile, AffymetrixCelFile, and AffymetrixCelSet.
        These are designed to be memory efficient but still being fast.
        The idea is to keep all data on file and only read data into
        memory when needed.  Clever caching mechanisms are used to
        minimize the overhead of data IO.  All of the above is hidden
        in the package API and for the developer (and the end user),
        the data is queried as if it lives in memory.  With this design
        it is only the diskspace that limits the number of arrays that
        can be analyzed.  To install, do:
        source("http://www.aroma-project.org/hbLite.R");
        hbInstall("aroma.affymetrix").

convert.AffymetrixCdfFile: Converts a CDF into the same CDF but with another format

Description

Usage

Arguments

Value

See Also