createMonocellCdf.AffymetrixCdfFile

AffymetrixCdfFile.createMonocellCdf

createMonocellCdf,AffymetrixCdfFile-method

AffymetrixCdfFile.createMonoCell

createMonoCell.AffymetrixCdfFile

createMonoCell,AffymetrixCdfFile-method

chipType

Tags added to the chip type of the new CDF.

path

Number of cells per group field the new CDF
     should have.

nbrOfCellsPerField

Additional arguments passed to <code><a href="/link/writeCdf?package=aroma.affymetrix&version=2.5.0&to=affxparser" rd-options="affxparser" data-mini-rdoc="affxparser::writeCdf">writeCdf</a></code>.

A <code><a href="/link/double?package=aroma.affymetrix&version=2.5.0&to=base" rd-options="base" data-mini-rdoc="base::double">double</a></code> saying if more or less units should be converted
     per chunk.  A smaller value uses less memory.

A <code><a href="/link/logical?package=aroma.affymetrix&version=2.5.0&to=base" rd-options="base" data-mini-rdoc="base::logical">logical</a></code> or <code><a href="/link/Verbose?package=aroma.affymetrix&version=2.5.0&to=R.utils" rd-options="R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose

methods

internal

This package implements classes for files and sets of
        files for various Affymetrix file formats, e.g.
        AffymetrixCdfFile, AffymetrixCelFile, and AffymetrixCelSet.
        These are designed to be memory efficient but still being fast.
        The idea is to keep all data on file and only read data into
        memory when needed.  Clever caching mechanisms are used to
        minimize the overhead of data IO.  All of the above is hidden
        in the package API and for the developer (and the end user),
        the data is queried as if it lives in memory.  With this design
        it is only the diskspace that limits the number of arrays that
        can be analyzed.  To install, do:
        source("http://www.aroma-project.org/hbLite.R");
        hbInstall("aroma.affymetrix").

createMonocellCdf.AffymetrixCdfFile: Creates a mono-cell version of the CDF

Description

Usage

Arguments

Value

See Also