GcContentNormalization2: The GcContentNormalization2 class

Description

Package: aroma.affymetrix Class GcContentNormalization2

Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--Transform ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--ChipEffectTransform ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--AdditiveCovariatesNormalization ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--GcContentNormalization2

Directly known subclasses:

public static class GcContentNormalization2 extends AdditiveCovariatesNormalization

This class represents a normalization method that corrects for annotation-data covariate effects on copy-number chip-effect estimates.

Usage

GcContentNormalization2(...)

Arguments

...

Arguments passed to the constructor of AdditiveCovariatesNormalization.

Fields and Methods

Methods:

	`plotCovariateEffects`
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Methods inherited from AdditiveCovariatesNormalization: getAsteriskTags, getCdf, getCovariates, getOutputDataSet00, getParameters, process Methods inherited from ChipEffectTransform: getRootPath Methods inherited from Transform: getOutputDataSet, getOutputFiles Methods inherited from AromaTransform: as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis