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aroma.affymetrix (version 3.0.0)

SmoothRmaModel: The SmoothRmaModel class

Description

Package: aroma.affymetrix Class SmoothRmaModel

Object ~~| ~~+--ChromosomalModel ~~~~~~~| ~~~~~~~+--SmoothMultiarrayModel ~~~~~~~~~~~~| ~~~~~~~~~~~~+--SmoothRmaModel

Directly known subclasses:

public abstract static class SmoothRmaModel extends SmoothMultiarrayModel

This class represents the Chromosomal Smoothing Robust Multichip Analysis method.

Usage

SmoothRmaModel(...)

Arguments

...
Arguments passed to the constructor of SmoothMultiarrayModel.

Fields and Methods

Methods: No methods defined. Methods inherited from SmoothMultiarrayModel: as.character, createOutputTuple, fitOneChromosome, getAsteriskTags, getBandwidth, getFitUnitGroupFunction, getOutputTuple, getRootPath, setBandwidth Methods inherited from ChromosomalModel: as.character, fit, getAlias, getAromaGenomeTextFile, getAsteriskTags, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getName, getNames, getParentPath, getPath, getReportPath, getRootPath, getSetTuple, getSets, getTags, indexOf, nbrOfArrays, nbrOfChipTypes, setChromosomes, setGenome, getListOfGenomeInformations, getPcuTheta, getPositionChipTypeUnit Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis