SpatialReporter: The SpatialReporter class

Description

Package: aroma.affymetrix Class SpatialReporter

Object ~~| ~~+--GenericReporter ~~~~~~~| ~~~~~~~+--AffymetrixFileSetReporter ~~~~~~~~~~~~| ~~~~~~~~~~~~+--AffymetrixCelSetReporter ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--SpatialReporter

Directly known subclasses:

public abstract static class SpatialReporter extends AffymetrixCelSetReporter

A SpatialReporter generates image files of spatial representations of cell signals for each of the arrays in the input set.

Usage

SpatialReporter(..., reference=NULL)

Arguments

...

Arguments passed to AffymetrixCelSetReporter.

reference

An optional reference AffymetrixCelFile.

Fields and Methods

Methods:

	`addColorMap`
-
`getColorMaps`	-
	`plotMargins`
-
`process`	-
	`setColorMaps`
-

Methods inherited from AffymetrixCelSetReporter: as.character, getChipType, getDataSet, getPath, nbrOfArrays Methods inherited from AffymetrixFileSetReporter: getFileSet, getInputName, getInputTags Methods inherited from GenericReporter: as.character, getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getRootPath, getTags, process, setAlias, setup Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis